Bioconductor Alternative splicing

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850

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.1 years ago noahhelton98 ▴ 20

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1.2k

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sgseq alternative splicing rna seq

updated 4 months ago by Sara • 0 • written 5.0 years ago by 116100016 • 0

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972

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rna seq SGSeq Alternative splicing

updated 5.1 years ago by Leonard Goldstein ▴ 260 • written 5.1 years ago by 116100016 • 0

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1.2k

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aspli readCounts rna-seq alternative splicing AS

5.8 years ago fernandalpcosta ▴ 10

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R alternative splicing ASpli AsDiscover

5.9 years ago abdul rawoof ▴ 60

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1.1k

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rnaseq alternative splicing ASpli

6.0 years ago nicolas.guyon2 • 0

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rna-seq alternative splicing SGSeq

6.1 years ago andrea.bast • 0

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maser R rMATs alternative splicing

6.2 years ago Reza • 0

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limma rna-seq alternative splicing

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by lirongrossmann ▴ 80

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limma voom alternative splicing

8.8 years ago osa.zuta ▴ 40

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sgseq splicing alternative splicing

updated 8.8 years ago by Leonard Goldstein ▴ 260 • written 8.8 years ago by vakul.mohanty ▴ 20

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1.2k

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deseq2 dexseq alternative splicing

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by sahiilseth • 0

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

9.2 years ago Fahmi Nazarie • 0

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dexseq alternative splicing exon skipping

updated 9.7 years ago by Simon Anders ★ 3.8k • written 9.7 years ago by ebadr • 0

14 results • Page 1 of 1

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Comment: Crossover design with limma by gohafis752 • 0

Hi. Nowadays, treatment from [https://ways2well.com/blog/what-is-the-lowest-dose-of-progesterone-for-hrt][1] is gaining more and more popul…

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.

Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k

Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.

Comment: Differential Expression Genes as Independent Variables by abadgerw • 0

The data that is repeated is a quantitative metric of post-mortem pathology across multiple sections. Not all patients have the same number…

Answer: Crossover design with limma by Gordon Smyth 52k

Your experiment is somewhat more elaborate than a classical crossover design because of the period-specific baseline controls. The analyses…

Votes

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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